EnteriX:

The Computational Biology Group Department of Computer Science George Washington University

This site allows comparative views of a reference genome (E. coli K-12 or O157:H7, S. typhimurium LT2, S. typhi CT18, S. paratyphi A, K. pneumoniae, Enterobacter sakazakii or Pseudomonas aeruginosa PAO1) with sequences from several related bacteria using two different visualization tools. The Enteric server offers large-scale views of pairwise alignments, with point-and-click capabilities to retrieve related gene and alignment information. The Menteric tool displays nucleotide-level multiple alignments of the bacterial sequences, along with regulatory site annotations which the user interested in conservation and functional studies may want to explore further.

Each tool is accompanied by documentation on its features and provides links to related sites of potential interest, for easy navigation.
 

            The Enteric server

            The Menteric server

Enterix has moved from its previous home at Penn State.

If you use this software in a publication, please cite:

• Nucleic Acids Research, 2000, Vol 28, No 18. "Web-based visualization tools for bacterial genome alignments." Liliana Florea, Cathy Riemer, Scott Schwartz, Zheng Zhang, Nikola Stojanovic, Webb Miller, Michael McClelland.
   
• Nucleic Acids Research, 2003, Vol 31, No 13. "Enterix 2003: visualization tools for genome alignments of enterobacteriaceae." Liliana Florea, Michael McClelland, Cathy Riemer, Scott Schwartz, Webb Miller.

A complete list of relevant bibliographical references is here.

Bacterial sequences used in comparative views