The set of bacterial genomes used in comparative analyses consists of
five E. coli strains, twenty-one species of Salmonella, and several
species from related genera. For simplicity, the names were abbreviated
in all graphical representations as follows:
| (1-7) | ECO | Escherichia coli K-12 (E. coli) | |||
| (1-7) | ECH | Escherichia coli 0157:H7 (Enterohemorragic E. coli) | |||
| (1-7) | ECU | Escherichia coli CFT073 | |||
| (1-7) | ECA | Escherichia coli 042 | |||
| (1-7) | ECP | Escherichia coli E2348/69 | |||
| (1,3) | ESA | Enterobacter sakazakii | |||
| (1,3) | CKO | Citrobacter koseri | |||
| (1-7) | SHG | Shigella flexneri 2a str. 301 | |||
| (1-7) | SHD | Shigella dysenteriae M131649 | |||
| (1-7) | SHS | Shigella sonnei 53G | |||
| (1-7) | STM | Salmonella typhimurium LT2 | |||
| (2,6) | STA, STF | Salmonella typhimurium 14028 | |||
| (2,4-6) | SSL | Salmonella Typhimurium SL1344 | |||
| (1-7) | STY | Salmonella typhi CT18 | |||
| (2,4-6) | STT | Salmonella typhi Ty2 | |||
| (1-7) | SPA | Salmonella paratyphi A | |||
| (2,4-6) | SPB | Salmonella paratyphi B | |||
| (2,4-6) | SPR | Salmonella paratyphi B SARB47 | |||
| (1-6) | SPC | Salmonella paratyphi C | |||
| (2,4-6) | SEP | Salmonella enteritidis PT4 | |||
| (2,4-6) | SEN | Salmonella enteritidis | |||
| (2,4-6) | SEB | Salmonella enteritidis SARB17 | |||
| (2,4-6) | SDU | Salmonella dublin | |||
| (2,4-6) | SGA | Salmonella gallinarum | |||
| (2,4-6) | SNE | Salmonella Newport SL317 | |||
| (2,4-6) | SNL | Salmonella Newport SL254 | |||
| (2,4-6) | SSA | Salmonella salamae (ssp. II) | |||
| (2,4-6) | SDI | Salmonella diarizonae (ssp. IIIb) | |||
| (2,4-6) | SAR | Salmonella arizonae (ssp. IIIa) | |||
| (2,4-6) | SHO | Salmonella houtenae (ssp. IV) | |||
| (2,4-6) | SBO | Salmonella bongori | |||
| (1-7) | KPN | Klebsiella pneumoniae | |||
| (6) | KOX | Klebsiella oxytoca | |||
| (2,4-6) | ERC | Erwinia carotovora subspecies atroseptica SCRI1043 | |||
| (1-7) | ERA | Erwinia amylovora | |||
| (1-7) | SMA | Serratia marscenses | |||
| (1-7) | YPE | Yersinia pestis | |||
| (1-7) | YEN | Yersinia enterocolitica (type 0:8) | |||
| (1-7) | VCH | Vibrio cholerae | |||
| (1,3,8) | PAE | Pseudomonas aeruginosa PAO1 | |||
| (8) | PAP | Pseudomonas aeruginosa PA7 | |||
| (8) | PAL | Pseudomonas aeruginosa LES | |||
| (8) | PAF | Pseudomonas aeruginosa PA14 | |||
| (8) | PEN | Pseudomonas entomophila L48 | |||
| (8) | PFO | Pseudomonas fluorescens PfO-1 | |||
| (8) | PFF | Pseudomonas fluorescens Pf-5 | |||
| (8) | PMY | Pseudomonas mendocina ymp | |||
| (8) | PPW | Pseudomonas putida W619 | |||
| (8) | PPF | Pseudomonas putida F1 | |||
| (8) | PPK | Pseudomonas putida KT2440 | |||
| (8) | PST | Pseudomonas stutzeri A1501 | |||
| (8) | PYA | Pseudomonas syringae 1448A | |||
| (8) | PYB | Pseudomonas syringae B728a | |||
| (8) | PYD | Pseudomonas syringae DC3000 |
Species marked with a '1'-'8' in the first column are
included in the comparative views using E. coli K-12 (1),
S. typhimurium LT2 (2), E. coli O157:H7 (3),
S. typhi CT18 (4), S. paratyphi A (5), K. pneumoniae (6),
E. sakazakii ATCC BAA-894 (7) and P. aeruginosa PAO1,
respectively, as the reference genome.